PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895093.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 345aa    MW: 37662.9 Da    PI: 8.2025
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.95.7e-3462119359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v Y+eClkNhAas+Ggha+DGCgEfmp +++  +++++lkCaACgCHRnFHRre++e
  XP_015895093.1  62 VVSYRECLKNHAASIGGHALDGCGEFMPCPTAIpTDPTSLKCAACGCHRNFHRREPDE 119
                     689**************************99999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014472.07E-64755No hitNo description
ProDomPD1257743.0E-2163119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.7E-2863117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.57565116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.8E-3165116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.4E-28222292IPR009057Homeodomain-like
SuperFamilySSF466892.27E-17223292IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-24231287IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDLSPSPTNT IKTPDTDTET PPEAQPTKSL SFTNGSLKRH HPQPPPPPPP PPPPPPPPSS  60
MVVSYRECLK NHAASIGGHA LDGCGEFMPC PTAIPTDPTS LKCAACGCHR NFHRREPDEP  120
ITGCKILSFH HRYPSPPLPP PIRPCHRSSS PSLSPSRSSS PGPTPSPHSP PPVSHLPPNS  180
YFASPPQMLL ALSTGFSGPS DEHHNHQHHH NQSFNQTAVM MKTTTENSNG RKRFRTKFSQ  240
EQKEKMHLFA EKVGWKMVKS DEGIVEEFCN EVGVGKGVLK VWMHNNKHTL GKRDKGNLEG  300
NVDVDDNNNN NNNNNNGGGD RVLNNEDRKA DFNLFSNGSS SSPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202322891875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895093.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ19e-64ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLM5XJ801e-95M5XJ80_PRUPE; Uncharacterized protein
STRINGVIT_14s0108g00750.t013e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-29zinc finger homeodomain 1